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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7405681_7406616_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7405681 - 7406616
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTAACTAATT
Flanking Amino Acid:
EDVHTFLMEQKLDFTESDCS
Intron Amino Acid Position:
1465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.1
24.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.6
0.58
1
68.8
41.6
Minor 5ss
35.8
-1.6
2.8
40.3
40.1
Minor BPS
50.6
0.1
2.1
77.86
37.9

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491