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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7408323_7409770_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7408323 - 7409770
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCTAC
U12 Branch Point Sequence:
CTGACCCTATTT
Flanking Amino Acid:
MTAVCKAAIIADSSSFRVDT
Intron Amino Acid Position:
1490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
56.1
0.15
1.3
56.4
40.3
Major PPT
83.8
0.76
0.7
81.1
24.1
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
47.3
-0.1
2
65.1
45.6

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614