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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7433471_7434747_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7433471 - 7434747
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTACCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATTTTACTAACA
Flanking Amino Acid:
MDAILTEAIKACFQKSGASV
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
70.4
0.46
1
65.3
41
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
58.2
0.25
1.9
75.7
34.8

Associated Gene:

Gene:
HP1BP3
Ensembl Gene ID:
ENSAPLG00000005878
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006131
7430609 - 7444777
14169