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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7434892_7435441_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7434892 - 7435441
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTTTGAACT
Flanking Amino Acid:
RELERGIIRQVKGKGASGSF
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
65.5
0.35
1.1
60.3
44.8
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
71.3
0.75
1.3
85.31
34.6

Associated Gene:

Gene:
HP1BP3
Ensembl Gene ID:
ENSAPLG00000005878
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006131
7430609 - 7444777
14169