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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7438190_7438870_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7438190 - 7438870
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGCC
5'SS Class:
major
3'SS Sequence:
CCTTGGAAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTGTCTTGATG
Flanking Amino Acid:
TGKGASGTFQLKKSGEKPLL
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.3
68.7
37.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
53.5
0.08
1
47.9
38.4
Minor 5ss
27.1
-2.6
3.1
34.4
41.3
Minor BPS
65.1
0.33
1.5
69.4
38.8

Associated Gene:

Gene:
HP1BP3
Ensembl Gene ID:
ENSAPLG00000005878
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006131
7430609 - 7444777
14169