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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_743853_744237_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
743853 - 744237
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
ATCCACATAAAT
Flanking Amino Acid:
KTDVHSPLKYRVMGSLQNFE
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
84.4
0.77
0.8
83.9
31.1
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
47.9
-0
1.9
67.76
42

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798