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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7439031_7441506_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7439031 - 7441506
Intron Length:
2476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAACTAT
5'SS Class:
major
3'SS Sequence:
TGATTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCTCTGATTT
Flanking Amino Acid:
NHPGTNSNFQVHLLKRTLQR
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
68.2
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
80.9
0.7
0.9
76
37.8
Minor 5ss
44.4
-0.6
3
55.6
48.7
Minor BPS
56.4
0.28
1.7
77.98
38.5

Associated Gene:

Gene:
HP1BP3
Ensembl Gene ID:
ENSAPLG00000005878
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006131
7430609 - 7444777
14169