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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_744315_744573_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
744315 - 744573
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TAATGATAAATT
Flanking Amino Acid:
KQLFFLNFAQVWCGSYRPEY
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.4
33.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.1
0.66
0.9
73.3
37.1
Minor 5ss
34.8
-1.7
2.9
45
42.5
Minor BPS
46.1
-0.2
2.2
67.11
43.6

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798