About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7443877_7444226_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7443877 - 7444226
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATTTT
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTCTTCAAAT
Flanking Amino Acid:
PTMRKSLRAKKQQEHGDWGN
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
84
27.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.7
82.1
30
Minor 5ss
47.2
-0.3
2.9
66.9
38.4
Minor BPS
62.3
0.46
1.6
77.58
38.2

Associated Gene:

Gene:
HP1BP3
Ensembl Gene ID:
ENSAPLG00000005878
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006131
7430609 - 7444777
14169