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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7451272_7453592_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7451272 - 7453592
Intron Length:
2321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GGCGTACCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTCGAC
U12 Branch Point Sequence:
TCGCCTTCGACG
Flanking Amino Acid:
ERVGLCRHRQEHGTEQIYND
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
51.5
0.04
1.3
53.5
42
Major PPT
54.3
0.1
1.1
47.4
40.7
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
48.5
-0.2
1.7
51.84
43.2

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006444
7451169 - 7473152
21984