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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7454958_7455984_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7454958 - 7455984
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTCTCCTGAAAT
Flanking Amino Acid:
AFEHIFESIQCAENTKFLVR
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
80.2
0.68
0.9
76.3
37.7
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
71.9
0.77
1.5
86.48
39

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028931
7451169 - 7473152
21984
ENSAPLT00000006444
7451169 - 7473152
21984
ENSAPLT00000042231
7449392 - 7473152
23761