About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7458988_7462736_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7458988 - 7462736
Intron Length:
3749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TAACCCAGAATT
Flanking Amino Acid:
FTIHMEICTVDERGQDHLRA
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
90
0.9
0.7
85.2
29.1
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
50.9
0.11
1.7
70.3
39.7

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042231
7449392 - 7473152
23761
ENSAPLT00000028931
7451169 - 7473152
21984
ENSAPLT00000006444
7451169 - 7473152
21984