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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7466251_7466378_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7466251 - 7466378
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTTC
5'SS Class:
weak_major
3'SS Sequence:
CTCTTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTTTCAGAGCT
Flanking Amino Acid:
AVDEEPVSVKDAAAPQTVQD
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
64.3
43.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78.4
0.64
0.8
76.2
32.4
Minor 5ss
60.1
0.34
2.7
76.6
39
Minor BPS
49.1
0.01
2
74.75
41.4

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042231
7449392 - 7473152
23761
ENSAPLT00000028931
7451169 - 7473152
21984
ENSAPLT00000006444
7451169 - 7473152
21984