About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7466504_7469036_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7466504 - 7469036
Intron Length:
2533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TACTGCTCAGCT
Flanking Amino Acid:
VPVDQQQVLARLQMLEQQVV
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
34.3
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
83.5
0.75
0.8
76.7
37.4
Minor 5ss
28.4
-2.5
3
34.8
41.6
Minor BPS
47.8
-0
2.2
69.45
47

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042231
7449392 - 7473152
23761
ENSAPLT00000028931
7451169 - 7473152
21984
ENSAPLT00000006444
7451169 - 7473152
21984