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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7469269_7470541_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7469269 - 7470541
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATAACCCCAACT
Flanking Amino Acid:
SKLLEKMQKKLQAAETEIKD
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.2
0.54
1
69.1
40.7
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
51.9
0.14
1.9
74.01
41.8

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006444
7451169 - 7473152
21984
ENSAPLT00000042231
7449392 - 7473152
23761
ENSAPLT00000028931
7451169 - 7473152
21984