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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_746959_747252_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
746959 - 747252
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
YTWELAGGQNVSGISTLGEN
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
68
0.45
1
57.8
39
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798