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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7471600_7472063_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7471600 - 7472063
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTTCTGATT
Flanking Amino Acid:
SPSAESGEPMQEEDRYKLML
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.4
0.75
0.9
77.7
35.3
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
49.5
0.04
1.6
67.28
38.1

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042231
7449392 - 7473152
23761
ENSAPLT00000028931
7451169 - 7473152
21984
ENSAPLT00000006444
7451169 - 7473152
21984
Gene:
DDOST
Ensembl Gene ID:
ENSAPLG00000006961
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007246
7471532 - 7478489
6958