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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7472185_7472985_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7472185 - 7472985
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
TTTTGCCCATGT
Flanking Amino Acid:
ILNTDPMKNRAQPTAPSGLN
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
81.4
0.71
0.7
72.9
31.9
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
40.6
-0.6
2.5
68.76
47.7

Associated Gene:

Gene:
KIF17
Ensembl Gene ID:
ENSAPLG00000006199
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028931
7451169 - 7473152
21984
ENSAPLT00000006444
7451169 - 7473152
21984
ENSAPLT00000042231
7449392 - 7473152
23761
Gene:
DDOST
Ensembl Gene ID:
ENSAPLG00000006961
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007246
7471532 - 7478489
6958