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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_747387_748501_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
747387 - 748501
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
ATTTTTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCTTGGATT
Flanking Amino Acid:
HEITHGFDDNGRNFDKDGNM
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
68.1
38.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.3
0.55
0.9
70.4
34.8
Minor 5ss
27.9
-2.5
2.8
32.3
42
Minor BPS
63
0.49
1.4
81.17
34.3

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798