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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7474138_7474711_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7474138 - 7474711
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
TGGTGCATAACA
Flanking Amino Acid:
SVLVAASSDIGDPLRELGSE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
83
0.74
0.7
81.3
23.8
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
54.1
0.13
2.1
69.15
42.9

Associated Gene:

Gene:
DDOST
Ensembl Gene ID:
ENSAPLG00000006961
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007246
7471532 - 7478489
6958