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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7474816_7475213_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7474816 - 7475213
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGTG
5'SS Class:
major
3'SS Sequence:
TGTTTCCTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
GTTTCCTCCAAG
Flanking Amino Acid:
HNYDISDPGQHTLIVADAEN
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.5
41.5
Major BPS
66.4
0.41
1
59
37.6
Major PPT
70.2
0.45
1
68.3
37.8
Minor 5ss
39.3
-1.2
3.5
55
49.2
Minor BPS
48.7
-0.2
2.2
62.05
45.2

Associated Gene:

Gene:
DDOST
Ensembl Gene ID:
ENSAPLG00000006961
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007246
7471532 - 7478489
6958