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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7476384_7476662_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7476384 - 7476662
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCACTAG
5'SS Class:
major
3'SS Sequence:
CCTTCATCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATTCCTTCATC
Flanking Amino Acid:
AVQKATPGSKRYSQTGNYEL
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
55.4
40.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
74.7
0.56
0.8
66.3
34.7
Minor 5ss
36
-1.6
3.3
46
49.3
Minor BPS
64.5
0.44
1.8
71.14
40.6

Associated Gene:

Gene:
DDOST
Ensembl Gene ID:
ENSAPLG00000006961
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007246
7471532 - 7478489
6958