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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7476811_7477140_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7476811 - 7477140
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GGGTTTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCGCTCCTGACT
Flanking Amino Acid:
PNAYTVTDLVEYSIVIEKLS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.1
45
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71.3
0.48
1.1
61.5
48.6
Minor 5ss
34.5
-1.8
3.4
44.4
44.4
Minor BPS
51.4
0.12
1.7
68.79
42.3

Associated Gene:

Gene:
DDOST
Ensembl Gene ID:
ENSAPLG00000006961
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007246
7471532 - 7478489
6958