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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7523457_7532120_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7523457 - 7532120
Intron Length:
8664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
CTCTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATCCATT
Flanking Amino Acid:
ERFKALNAWSLQSYFAACED
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
67
40
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.4
0.86
0.7
83.8
24.4
Minor 5ss
31.6
-2.1
2.7
34.2
41.4
Minor BPS
48.3
-0
2.2
74.39
42.3

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047012
7523034 - 7548930
25897