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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7529133_7532120_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7529133 - 7532120
Intron Length:
2988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATCCATT
Flanking Amino Acid:
SGALFFPTDVLQSYFAACED
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
72.9
34.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.4
0.86
0.7
83.8
24.4
Minor 5ss
43.3
-0.7
2.9
52.2
46
Minor BPS
48.3
-0
2.2
74.39
42.3

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012885
7528757 - 7547943
19187