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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7534123_7534534_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7534123 - 7534534
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTCTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
AGATCCTGACTC
Flanking Amino Acid:
LEFIRFDLDLDAPYLDLAPY
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
82.3
0.73
0.7
76.6
25.4
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
50.1
-0
1.7
59.61
39.2

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033614
7526477 - 7548162
21686
ENSAPLT00000031867
7523034 - 7548930
25897
ENSAPLT00000030096
7523034 - 7548930
25897
ENSAPLT00000048302
7523034 - 7547943
24910
ENSAPLT00000012885
7528757 - 7547943
19187
ENSAPLT00000047012
7523034 - 7548930
25897