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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7536661_7540184_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7536661 - 7540184
Intron Length:
3524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGATGCTAATCC
Flanking Amino Acid:
NESNNTVSVGDGDLTDTLSC
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
86
0.81
0.8
80.4
31.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
45.7
-0.3
2.3
59.76
45.1

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031867
7523034 - 7548930
25897