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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7537106_7540184_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7537106 - 7540184
Intron Length:
3079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACAT
5'SS Class:
major
3'SS Sequence:
CTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGATGCTAATCC
Flanking Amino Acid:
MQSMPSRDWEDGDLTDTLSC
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
67.7
39.3
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
86
0.81
0.8
80.4
31.5
Minor 5ss
26.8
-2.7
3.3
37.9
47
Minor BPS
45.7
-0.3
2.3
59.76
45.1

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047012
7523034 - 7548930
25897
ENSAPLT00000033614
7526477 - 7548162
21686
ENSAPLT00000030096
7523034 - 7548930
25897
ENSAPLT00000012885
7528757 - 7547943
19187
ENSAPLT00000048302
7523034 - 7547943
24910