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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7540420_7541648_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7540420 - 7541648
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACA
5'SS Class:
major
3'SS Sequence:
TTTCACCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGGTCTTTCACC
Flanking Amino Acid:
SESCTELEVIRLAKKKKTGK
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
38.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
76.7
0.6
0.9
70.7
34.8
Minor 5ss
25.7
-2.8
3.1
31.1
42.7
Minor BPS
62.7
0.38
1.8
70.61
41.1

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033614
7526477 - 7548162
21686
ENSAPLT00000031867
7523034 - 7548930
25897
ENSAPLT00000030096
7523034 - 7548930
25897
ENSAPLT00000048302
7523034 - 7547943
24910
ENSAPLT00000012885
7528757 - 7547943
19187
ENSAPLT00000047012
7523034 - 7548930
25897