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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7543005_7544264_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7543005 - 7544264
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCCAC
5'SS Class:
weak_major
3'SS Sequence:
GTCTCTGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTGCCCCCATT
Flanking Amino Acid:
TDCYVYLIRKGAAEKPYMVE
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
55.9
43.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
67.8
0.4
1.1
61
44.6
Minor 5ss
49.8
-0
2.5
67.7
43.5
Minor BPS
45.6
-0.2
2.3
72.68
44.5

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031867
7523034 - 7548930
25897
ENSAPLT00000030096
7523034 - 7548930
25897
ENSAPLT00000048302
7523034 - 7547943
24910
ENSAPLT00000012885
7528757 - 7547943
19187
ENSAPLT00000047012
7523034 - 7548930
25897
ENSAPLT00000033614
7526477 - 7548162
21686