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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7546607_7546890_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7546607 - 7546890
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
CTACCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAG
U12 Branch Point Sequence:
CCTTCCCTACCC
Flanking Amino Acid:
QYFCQAVSKGVIPQGVAPTP
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
50.6
47.7
Major BPS
54.8
0.12
1.7
57.4
49.1
Major PPT
70.8
0.47
1
65
36
Minor 5ss
31.4
-2.1
3
30.3
42.8
Minor BPS
53.2
0.08
2
66.79
45

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031867
7523034 - 7548930
25897
ENSAPLT00000030096
7523034 - 7548930
25897
ENSAPLT00000048302
7523034 - 7547943
24910
ENSAPLT00000012885
7528757 - 7547943
19187
ENSAPLT00000047012
7523034 - 7548930
25897
ENSAPLT00000033614
7526477 - 7548162
21686