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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7547071_7547150_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7547071 - 7547150
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCGGTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
GTGGTAGTAACG
Flanking Amino Acid:
TEAGKEYCILEFAQDRKQFL
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
71.7
0.49
1
68.5
42.1
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
42.1
-0.7
2.3
48.33
45.2

Associated Gene:

Gene:
PLEKHM2
Ensembl Gene ID:
ENSAPLG00000012347
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033614
7526477 - 7548162
21686
ENSAPLT00000031867
7523034 - 7548930
25897
ENSAPLT00000030096
7523034 - 7548930
25897
ENSAPLT00000048302
7523034 - 7547943
24910
ENSAPLT00000012885
7528757 - 7547943
19187
ENSAPLT00000047012
7523034 - 7548930
25897