About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_754782_755025_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
754782 - 755025
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
TTTCAAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GGTGTTTCAAAT
Flanking Amino Acid:
FKDARANYRKALYGTTLEEA
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
73
0.52
0.9
64
41.4
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
47.4
-0.1
1.7
62.51
41.5

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798