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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7550812_7551145_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7550812 - 7551145
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTCAC
U12 Branch Point Sequence:
TTCACCCCAAAT
Flanking Amino Acid:
VAVGHQHNHESISGAFESIY
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
76.7
0.6
0.8
68.5
37.3
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
48.3
-0
2
71.56
44.5

Associated Gene:

Gene:
SLC25A34
Ensembl Gene ID:
ENSAPLG00000022477
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034565
7544918 - 7551808
6891