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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_755120_755614_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
755120 - 755614
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCCCTGCACA
Flanking Amino Acid:
LKAIISKYSASTIQNYLIWR
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.7
0.6
0.9
72.1
32.6
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
61.1
0.34
1.9
78.11
38.1

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798