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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7551299_7551408_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7551299 - 7551408
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCGCTTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGAAAT
U12 Branch Point Sequence:
GCTCGGCTGACG
Flanking Amino Acid:
SAKDWVCEHQWFGEGSWAAV
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
46.9
-0.1
1.2
50.6
40.2
Major PPT
70.8
0.47
0.8
64.9
30.7
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
36.1
-1.2
2.5
41.46
43.1

Associated Gene:

Gene:
SLC25A34
Ensembl Gene ID:
ENSAPLG00000022477
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034565
7544918 - 7551808
6891