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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7551544_7551625_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7551544 - 7551625
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTCCAG
U12 Branch Point Sequence:
GGAGCTGCAGCC
Flanking Amino Acid:
YNQPVDADGAGKLYRGFWDC
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
63.6
42.4
Major BPS
40.5
-0.6
1.6
47.5
46
Major PPT
77.7
0.62
0.7
72.4
25.7
Minor 5ss
31.5
-2.1
3.3
40.8
45
Minor BPS
36
-1
2.1
40.82
38.9

Associated Gene:

Gene:
SLC25A34
Ensembl Gene ID:
ENSAPLG00000022477
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034565
7544918 - 7551808
6891