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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7552281_7552354_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7552281 - 7552354
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
TTGTCCCCACAG
Flanking Amino Acid:
GWALLDALLQGLVGACAVSV
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
75.7
0.58
0.8
69
31.6
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
43
-0.6
2.2
53.78
46.5

Associated Gene:

Gene:
TMEM82
Ensembl Gene ID:
ENSAPLG00000012466
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012976
7552202 - 7554968
2767