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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7552428_7552697_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7552428 - 7552697
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
CTGCTGTCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCTGCTGTCACC
Flanking Amino Acid:
LKVYLYIQCLNDPARQELKA
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.5
36.3
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
66.4
0.37
1
58.7
41.9
Minor 5ss
46.8
-0.3
2.7
60.7
37.9
Minor BPS
42.5
-0.6
2.4
52.59
45.8

Associated Gene:

Gene:
TMEM82
Ensembl Gene ID:
ENSAPLG00000012466
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012976
7552202 - 7554968
2767