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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7552897_7553358_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7552897 - 7553358
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCACAGCAG
5'SS Class:
major
3'SS Sequence:
CCACAGCAGCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
GCACCCACAGCA
Flanking Amino Acid:
SKVSGAGETELLLLCQYSLG
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
52
44.7
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
49.2
-0
1.1
39
38.8
Minor 5ss
18.1
-3.7
3.9
28.6
43.7
Minor BPS
41.6
-0.6
1.9
48.46
41

Associated Gene:

Gene:
TMEM82
Ensembl Gene ID:
ENSAPLG00000012466
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012976
7552202 - 7554968
2767