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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7553750_7554744_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7553750 - 7554744
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CGTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCCACCCTGACT
Flanking Amino Acid:
CYTLLVIYMQEEQRPSAGGQ
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
69.3
0.43
0.9
62.1
34.8
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
50.7
0.1
1.8
65.66
44.7

Associated Gene:

Gene:
TMEM82
Ensembl Gene ID:
ENSAPLG00000012466
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012976
7552202 - 7554968
2767