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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_756420_756934_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
756420 - 756934
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGATTGTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTCTAGTAATA
Flanking Amino Acid:
VMELETEIANATTPAEERHD
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
80
0.75
1
78.6
31
Major PPT
77.2
0.61
1
73.8
41.5
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
45.8
-0.3
2.2
61.09
39.4

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798