About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7593584_7596681_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7593584 - 7596681
Intron Length:
3098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGCGTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CTTGCATTAATA
Flanking Amino Acid:
PSSQPLGPGQRYGRVESVKI
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.6
0.11
1.4
53.4
46
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
40.9
-1
3.4
55.8
48.5
Minor BPS
62.5
0.39
1.7
72.1
40.4

Associated Gene:

Gene:
SPEN
Ensembl Gene ID:
ENSAPLG00000012618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013149
7593474 - 7644251
50778