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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_759364_760023_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
759364 - 760023
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TCATCCCTAACT
Flanking Amino Acid:
DRDSSRHIIYIDQPSLGMPS
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
75.8
0.64
1
65.8
41
Major PPT
83.9
0.76
0.8
81.4
36
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
72.2
0.78
1.7
85.86
39.9

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798