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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_760143_760740_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
760143 - 760740
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATAAATA
Flanking Amino Acid:
VASADWNDTKEPGWSMEEKL
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.8
0.63
0.9
72
37.7
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
47.4
-0.2
2.2
65.46
41.2

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798