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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7621725_7622574_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7621725 - 7622574
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AGTGCATTAAAA
Flanking Amino Acid:
QIEVTAWIGPETESENEFRP
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.7
0.62
0.8
69.5
36.8
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
53.8
0.11
1.8
65.49
40.1

Associated Gene:

Gene:
SPEN
Ensembl Gene ID:
ENSAPLG00000012618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013149
7593474 - 7644251
50778
ENSAPLT00000045169
7596803 - 7645609
48807
ENSAPLT00000036760
7596803 - 7645609
48807
ENSAPLT00000025914
7596803 - 7645609
48807
ENSAPLT00000023169
7596682 - 7645609
48928