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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7622727_7625098_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7622727 - 7625098
Intron Length:
2372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGTTGCTGACTG
Flanking Amino Acid:
NIFQRFGGIVDIDIKKVNGV
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
46.2
-0.4
2.2
56.73
44.9

Associated Gene:

Gene:
SPEN
Ensembl Gene ID:
ENSAPLG00000012618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013149
7593474 - 7644251
50778
ENSAPLT00000045169
7596803 - 7645609
48807
ENSAPLT00000036760
7596803 - 7645609
48807
ENSAPLT00000025914
7596803 - 7645609
48807
ENSAPLT00000023169
7596682 - 7645609
48928