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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7625225_7625803_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7625225 - 7625803
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTGTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTGTACTGATGG
Flanking Amino Acid:
GEYLGNNRLKLGFGKSMPTN
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
81.8
0.71
0.9
80.3
37.3
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
43.7
-0.6
2.1
53.12
47.2

Associated Gene:

Gene:
SPEN
Ensembl Gene ID:
ENSAPLG00000012618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025914
7596803 - 7645609
48807
ENSAPLT00000023169
7596682 - 7645609
48928
ENSAPLT00000013149
7593474 - 7644251
50778
ENSAPLT00000036760
7596803 - 7645609
48807