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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7625225_7628890_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7625225 - 7628890
Intron Length:
3666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTACCTTTTATT
Flanking Amino Acid:
GEYLGNNRLKVDFANRESQL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
61.8
0.45
1.6
78.06
38.1

Associated Gene:

Gene:
SPEN
Ensembl Gene ID:
ENSAPLG00000012618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045169
7596803 - 7645609
48807