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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_762712_769200_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
762712 - 769200
Intron Length:
6489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTCCAGCTAATT
Flanking Amino Acid:
TLVILYASSRGTHYGTNSGN
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
85.1
0.79
0.7
77.2
31.5
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
43.7
-0.4
2.4
67.03
43.7

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798